Man pages for js2264/cooleR
Analysing cool files in R with HiContacts
| arithmetics | HiContacts arithmetics functionalities |
| checks | Checks functions |
| cisTransRatio | cisTransRatio |
| Contacts | Contacts |
| getCompartments | Contact map compartments |
| getDiamondInsulation | Contact map insulation |
| getLoops | Finding loops in contact map |
| HiContacts-plots | HiContacts plotting functionalities |
| palettes | Matrix palettes |
| plot4C | Plotting virtual 4C profiles |
| plotMatrix | Plotting a contact matrix |
| plotPs | Plotting a P(s) distance law |
| plotSaddle | Plotting saddle plots |
| plotScalogram | Plotting scalograms |
| Ps | Compute the law of distance-dependent contact frequency,... |
| reexports | Objects exported from other packages |
| scalogram | Compute a scalogram of contacts |
| tracks | Aligning tracks with HiCExperiment objects |
| virtual4C | Computing virtual 4C profiles |
