combineCGGCgr: Convert Genomic ranges list to single genomic range with...
In jsemple19/methMatrix: Manipulate Lists of Methylation Matrices
combineCGGCgr R Documentation
Convert Genomic ranges list to single genomic range with sample methylation and total counts in metadata
Description
genomic ranges for CG and GC positions in each samples are combined and sorted. Then genomic ranges
from different samples are merged together putting methylation frequency (_M) and total read counts (_T) for each sample in the metadata.
Usage
combineCGGCgr(methFreqGR, samples)
Arguments
methFreqGR
A list (by sample) of a list (by C context) of genomic ranges for cytosine methylation frquency
samples
a vector of sample names for which to extract the data
Value
A genomic ranges wtih all CG and GC positions found in the samples. The metadata columns contain methylation frequency (_M) and total read count (_T) for each sample
jsemple19/methMatrix documentation built on Aug. 19, 2022, 3:57 p.m.
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| combineCGGCgr | R Documentation |
Convert Genomic ranges list to single genomic range with sample methylation and total counts in metadata
Description
genomic ranges for CG and GC positions in each samples are combined and sorted. Then genomic ranges from different samples are merged together putting methylation frequency (_M) and total read counts (_T) for each sample in the metadata.
Usage
combineCGGCgr(methFreqGR, samples)
Arguments
methFreqGR |
A list (by sample) of a list (by C context) of genomic ranges for cytosine methylation frquency |
samples |
a vector of sample names for which to extract the data |
Value
A genomic ranges wtih all CG and GC positions found in the samples. The metadata columns contain methylation frequency (_M) and total read count (_T) for each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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