pileupToConversionStatus: Extract methylation calls from single line of pileup file
In jsemple19/methMatrix: Manipulate Lists of Methylation Matrices
pileupToConversionStatus R Documentation
Extract methylation calls from single line of pileup file
Description
Extract methylation calls from single line of pileup file
Usage
pileupToConversionStatus(pileupLine)
Arguments
pileupLine
One line data frame from pileup file. Columns have been named: c("chr","start","ref","count","matches","BQ","reads")
Value
A data frame with C position, read name and C conversion call 0 (not converted (C) = methylated), 1 (converted (T) = not methylated)
jsemple19/methMatrix documentation built on Aug. 19, 2022, 3:57 p.m.
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| pileupToConversionStatus | R Documentation |
Extract methylation calls from single line of pileup file
Description
Extract methylation calls from single line of pileup file
Usage
pileupToConversionStatus(pileupLine)
Arguments
pileupLine |
One line data frame from pileup file. Columns have been named: c("chr","start","ref","count","matches","BQ","reads") |
Value
A data frame with C position, read name and C conversion call 0 (not converted (C) = methylated), 1 (converted (T) = not methylated)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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