methMats: Methylation matrix from dSMF analysis

In jsemple19/methMatrix: Manipulate Lists of Methylation Matrices

Methylation matrix from dSMF analysis

Description

Data from dSMF experiment from two strains of C. elegans: wildtype N2 Bristol, and fog-2 mutant (labelled 182). There are two samples for each strain. The data is a list of lists: a list of samples, and each sample contains a list of methylation matrices centered +-250bp around transcriptional start sites (TSSs) of C. elegans genes. The names of the matrices in the list are the Wormbase gene names. The column names in the matrices are the genomic cooridnates of cytosines that form part of a CpG or GpC motif. The rows of the matrices are pairs of sequence reads generated by sequencing 400-500bp amplicons with 2x250 paired end Illumina sequencing. Rownames are the read names.

Usage

data(methMats)

Format

An object of class list (it is a nested list)

References

Semple.J.I. & Meister P.

Examples

data(methMats)

jsemple19/methMatrix documentation built on Aug. 19, 2022, 3:57 p.m.