makeCGorGCbed: Create bed file of CpG or GpC motifs
In jsemple19/methMatrix: Manipulate Lists of Methylation Matrices
makeCGorGCbed R Documentation
Create bed file of CpG or GpC motifs
Description
Create bed file of CpG or GpC motifs
Usage
makeCGorGCbed(genomeFile, CGorGC)
Arguments
genomeFile
String with path to fasta file with genome sequence
CGorGC
String with motif to be found (either "CG" or "GC")
Value
A bed file with locations of the C in all occurrences of this motif on both strands will be written to
the same directory as genomeFile with the extension .CpG.bed or .GpC.bed
jsemple19/methMatrix documentation built on Aug. 19, 2022, 3:57 p.m.
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| makeCGorGCbed | R Documentation |
Create bed file of CpG or GpC motifs
Description
Create bed file of CpG or GpC motifs
Usage
makeCGorGCbed(genomeFile, CGorGC)
Arguments
genomeFile |
String with path to fasta file with genome sequence |
CGorGC |
String with motif to be found (either "CG" or "GC") |
Value
A bed file with locations of the C in all occurrences of this motif on both strands will be written to the same directory as genomeFile with the extension .CpG.bed or .GpC.bed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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