makeCGorGCbed | R Documentation |
Create bed file of CpG or GpC motifs
makeCGorGCbed(genomeFile, CGorGC)
genomeFile |
String with path to fasta file with genome sequence |
CGorGC |
String with motif to be found (either "CG" or "GC") |
A bed file with locations of the C in all occurrences of this motif on both strands will be written to the same directory as genomeFile with the extension .CpG.bed or .GpC.bed
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