Man pages for jspaezp/sctree
Tree based analysis of single rna-seq clusters
| antibodies | Query Antibodies from multiple vendors |
| as.data.frame.Seurat | Gets a data frame from a Seurat object |
| as.frequency.matrix | Convert confusion matrices and tables to frequency matrices |
| as.garnett | Converts a classification tree to a garnett output |
| autoplot | autoplot wrapper arround ggplot2 autoplot generic |
| autoplot.table | autoplot.table |
| cross_validate | Fits a decision tree in one data set and tests the... |
| FindAllMarkers | Gene expression markers for all identity classes |
| FindConservedMarkers | Finds markers that are conserved between the groups |
| FindMarkers | Gene expression markers of identity classes |
| fit_ctree | Fits a classification tree on a Seurat object |
| get_aliases | Gets the aliases for a gene names |
| get_cluster_mapping | Gets the corresponding cluster for each terminl node in a... |
| get_concensus_rules | Consolidates the rules in a decision tree per cluster |
| get_genesymbols | Gets the official gene symbol for protein or gene aliases |
| ggheatmap_base | Basic heatmap using ggplot |
| include_roxygen_example | include_roxygen_example |
| is.confusion.matrix | Check if the element has the structure of a confusion matrix |
| is_gene_membrane | Queries gene symbols and returns if they are annotated as... |
| plot_flowstyle | Plots data as faceted scatterplot emulating the ouput of flow... |
| plot_gates | Plot Decision trees as gates |
| print.concensus.rules | Prints concensus rules |
| RangerDE | RangerDE |
| ranger_importances | ranger_importances |
| small_5050_mix | A random subset of genes and cells from a 50:50 mixture of... |
| small_9901_mix | A random subset of genes and cells from a 99:1 mixture of... |
