plot_flowstyle: Plots data as faceted scatterplot emulating the ouput of flow...

In jspaezp/sctree: Tree based analysis of single rna-seq clusters

Description

Simulates flow cytometry plots for single cell rna seq data

Usage

plot_flowstyle(object, markernames, classif_col = "ident", ...)

## S3 method for class 'data.frame'
plot_flowstyle(
  object,
  markernames,
  classif_col = "ident",
  warn = TRUE,
  highlight_class = NULL,
  ...
)

## S3 method for class 'Seurat'
plot_flowstyle(object, markernames, classif_col = "ident", ...)

Arguments

object	data, either a Seurat of a data frame object
markernames	names of the markers to be used for the plot
classif_col	name of the classification column to be used for the grouping, defaults to "ident"
...	additional argumetns to be passed to GGally::ggpairs
warn	logical indicating if warninf should be shown, defaults to TRUE
highlight_class	a character indicating a class if it wants to be highlighted. ie "1"

Details

Note that it imputes a little bit of noise to values of 0 just for the Sake of visualization

Value

a ggplot grid with the plots

Methods (by class)

• data.frame: Draw a flowstyle plot from a data.frame

• Seurat: Draw a flowstyle plot from a Seurat object

Examples

plot_flowstyle(Seurat::pbmc_small, c("ACRBP", "TSC22D1", "VDAC3"))

jspaezp/sctree documentation built on April 30, 2020, 10:36 p.m.