antibodies: Query Antibodies from multiple vendors

In jspaezp/sctree: Tree based analysis of single rna-seq clusters

Description

Queries the respective antibody for each vendor and when posible filters for antibodies for IFC, IHC, and FLOW.

Usage

query_cc_antibodies(search_term, sleep = 1)

query_sc_antibodies(search_term, sleep = 1)

query_biocompare_antibodies(search_term, sleep = 1)

query_biolegend_antibodies(search_term, sleep = 1)

Arguments

search_term	The term used to query the antibodies
sleep	an ammount of time to wait before submitting the query. Check details for more information

Details

Most of these functions have been implemented as queries to the vendor website, therefore if many queries are done in quick succession, it is posible that the vendor considers the queries as an attack to their website. Therefore we have the sleep argument set to 1 by default, the function will wait 1 second before doing the query. If many queries will be done, feel free to modify the parameter but be aware that some requests might be denied.

Value

NULL when no results are found or a DF with information

Examples

query_cc_antibodies("CD11bfakename")
# NULL
query_cc_antibodies("CD11c")
#   Cat_num                                       Product Name Reactivity
# 1   97585                           CD11c (D1V9Y) Rabbit mAb          M
# 2   97473 CD11c (3.9) Mouse mAb (violetFluor™ 450 Conjugate)          H
# 3   42847    CD11c (3.9) Mouse mAb (redFluor™ 710 Conjugate)          H
# 4   80342          CD11c (3.9) Mouse mAb (PE-Cy7® Conjugate)          H
# 5   56025               CD11c (3.9) Mouse mAb (PE Conjugate)          H
# 6   69627             CD11c (3.9) Mouse mAb (FITC Conjugate)          H
# 7   51562         CD11c (3.9) Mouse mAb (APC-Cy7® Conjugate)          H
# 8   36268              CD11c (3.9) Mouse mAb (APC Conjugate)          H
# Product_Type
# 1  Primary Antibodies
# 2 Antibody Conjugates
# 3 Antibody Conjugates
# 4 Antibody Conjugates
# 5 Antibody Conjugates
# 6 Antibody Conjugates
# 7 Antibody Conjugates
# 8 Antibody Conjugates

query_sc_antibodies("CD11bfakename")
# NULL
head(query_sc_antibodies("CD11C"))
# Product_Name  Cat_num Citations Rating     Epitope
# 1   Integrin alpha X Antibody (B-6) sc-46676         3    (8) Integrin aX
# 2   Integrin alpha X Antibody (3.9)  sc-1185         2    (2) Integrin aX
# 3 Integrin alpha X Antibody (B-Iy6) sc-19989         1    (1) Integrin aX
# 4  Integrin alpha X Antibody (N418) sc-23951         3    (2) Integrin aX
# 6 Integrin alpha X Antibody (2Q865) sc-71455       NEW    (1) Integrin aX
# 7 Integrin alpha X Antibody (3H986) sc-71456       NEW    (1) Integrin aX
# Species                       Method
# 1   human WB, IP, IF, IHC(P) and ELISA
# 2   human               IP, IF and FCM
# 3   human                   IF and FCM
# 4   mouse                   IF and FCM
# 6   human                   IP and FCM
# 7   mouse                   IF and FCM

#' query_biocompare_antibodies("CD11bfakename")
# NULL
head(query_biocompare_antibodies("CD11C"),3)


query_biolegend_antibodies("CD11bfakename")
# NULL
head(query_biolegend_antibodies("CD11C"))
# [1] "MojoSortâ\u0084¢ Mouse CD11c Nanobeads"
# [2] "APC anti-human CD11c Antibody"
# [3] "Biotin anti-human CD11c Antibody"
# [4] "FITC anti-human CD11c Antibody"
# [5] "PE anti-human CD11c Antibody"
# [6] "PE/Cy5 anti-human CD11c Antibody"

jspaezp/sctree documentation built on April 30, 2020, 10:36 p.m.