buildJointTable: run library quality control (QC)

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

run library quality control (QC)

Description

run library quality control (QC)

Usage

buildJointTable(
  dataDir,
  inDir = NA,
  outDir = NA,
  paramFile = paste0(dataDir, "parameters.json"),
  mc.cores = 6,
  srOverride = FALSE,
  covOverride = FALSE
)

Arguments

dataDir	working data directory
inDir	input directory, defaults to subdirectory with latest timestamp ending in _mut_count.
outDir	output directory, defaults to input directory.
paramFile	input parameter file. defaults to <dataDir>/parameters.json
mc.cores	the number of CPU cores to use in parallel
srOverride	the single-replicate override flag
covOverride	override the requirement for coverage files. For backwards- compatibility with older versions prior to v0.7

Value

NULL. Results are written to file.

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.