drawCoverageMap: Output heatmap of marginal frequencies for all possible amino...

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

Output heatmap of marginal frequencies for all possible amino acid changes across all tiles

Description

Output heatmap of marginal frequencies for all possible amino acid changes across all tiles

Usage

drawCoverageMap(
  params,
  info,
  aaMarginal,
  wmThreshold,
  tilesPerRegion,
  tileDepths,
  depthTable,
  tileCensi,
  tileLambdas
)

Arguments

params	parameter sheet object
info	list containing details on condition (nscond), timepoint (tp), pdftag and outdir
aaMarginal	marginal frequency table at amino acid-level
wmThreshold	'well-measuredness' threshold
tilesPerRegion	a list of vectors containing the tile IDs for each region 'ri'
tileDepths	table with adjusted mean effective sequencing depth for each tile
depthTable	raw depth table
tileCensi	table containing population breakdown of variant types within each tile
tileLambdas	average number of mutations in each tile

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.