enactScale: Calculate scores by scaling logPhi (or bce values, as...
In jweile/tileseqMave: TileSeq MAVE Analysis pipeline
enactScale R Documentation
Calculate scores by scaling logPhi (or bce values, as applicable) to syn/nonsense medians
Description
Calculate scores by scaling logPhi (or bce values, as applicable) to syn/nonsense medians
Usage
enactScale(
msc,
aac,
sdThreshold,
overrides = c(syn = NA, non = NA),
lastFuncPos = Inf
)
Arguments
msc
data.frame containing the enrichment ratios (phi) and log(phi)
aac
the vector of corresponding amino acid changes
sdThreshold
stdev threshold for finding the syn/stop means
Value
data.frame with variant type, score and stdev
jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.
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| enactScale | R Documentation |
Calculate scores by scaling logPhi (or bce values, as applicable) to syn/nonsense medians
Description
Calculate scores by scaling logPhi (or bce values, as applicable) to syn/nonsense medians
Usage
enactScale(
msc,
aac,
sdThreshold,
overrides = c(syn = NA, non = NA),
lastFuncPos = Inf
)
Arguments
msc |
data.frame containing the enrichment ratios (phi) and log(phi) |
aac |
the vector of corresponding amino acid changes |
sdThreshold |
stdev threshold for finding the syn/stop means |
Value
data.frame with variant type, score and stdev
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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