filterVariants: Filter variants that have greater depth drop than max allowed...

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

Filter variants that have greater depth drop than max allowed depth drop or do not have minimum required depth

Description

Filter variants that have greater depth drop than max allowed depth drop or do not have minimum required depth

Usage

filterVariants(
  nsCond,
  params,
  xDepthDrops,
  xCounts,
  xSplitChanges,
  xTiles,
  mc.cores,
  allVariants = TRUE
)

Arguments

nsCond	the nonselect condition
params	parameter sheet object
xDepthDrops	table listing the relative drop for variants in xCounts table
xCounts	marginal or all counts table
xSplitChanges	table with split codon changes for variants in xCounts
xTiles	tile assignments for each variant in xCounts table
mc.cores	number of processes to run in parallel for multi-core processing
allVariants	flag, whether the xCounts table contains all variants

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.