dropoutAnalysis: run variant dropout troubleshooter

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

run variant dropout troubleshooter

Description

run variant dropout troubleshooter

Usage

dropoutAnalysis(
  dataDir,
  countDir = NA,
  outDir = NA,
  paramFile = paste0(dataDir, "parameters.json"),
  srOverride = FALSE,
  tile = NA
)

Arguments

dataDir	working data directory
countDir	input directory for counts, defaults to subdirectory with latest timestamp ending in _mut_count.
outDir	output directory, defaults to name of input directory with _QC tag attached.
paramFile	input parameter file. defaults to <dataDir>/parameters.json
srOverride	single replicate override (use with caution)

Value

NULL. Results are written to file.

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.