mergeMatrix: Merge matrix

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Merge matrix

Description

This function executes a ubuntu docker that merge two matrix

Usage

mergeMatrix(
  group = c("sudo", "docker"),
  scratch.folder,
  file1,
  file2,
  separator1,
  separator2,
  name1 = "NULL",
  name2 = "NULL"
)

Arguments

group,	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,	a character string indicating the path of the scratch folder
file1,	a character string indicating the path of the first matrix to be merged, with file name and extension included
file2,	a character string indicating the path of the second matrix to be merged, with file name and extension included
separator1,	separator used in count file, e.g. '\t', ','
separator2,	separator used in count file, e.g. '\t', ','
name1,	the name that will be the prefix in the header of the matrix1 cells , null will not add any prefix
name2,	the name that will be the prefix in the header of the matrix2 cells , null will not add any prefix

Value

a merged matrix

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
system("wget http://130.192.119.59/public/annotated_setPace_10000_noC5.txt.zip")
unzip("annotated_setPace_10000_noC5.txt.zip")
subSetCell(group="docker", scratch.folder="/data/scratch", 
           file=paste(getwd(), "annotated_setPace_10000_noC5.txt",sep="/"), 
           separator="\t", cells.number=200)
mergeMatrix(group="docker", scratch.folder="/data/scratch", 
            file1=paste(getwd(),"annotated_setPace_10000_noC5.txt", sep="/"),
            file2=paste(getwd(),"subset_200_annotated_setPace_10000_noC5.txt", sep="/"), 
            separator1="\t",separator2="\t",name1="test1",name2="test2")

## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.