permutationMovie: Permutation Movie

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Permutation Movie

Description

This function executes a ubuntu docker that create a video showing the cluster changing of all the cells

Usage

permutationMovie(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  nCluster,
  separator,
  framePP,
  permutationNumber
)

Arguments

group,	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,	a character string indicating the path of the scratch folder
file,	a character string indicating the path of the file, with file name and extension included
nCluster,	cluster folder generated by simlBootstrap or tsneBootstrap to be analysed
separator,	separator used in count file, e.g. '\t', ','
framePP,	Number of frame for each permutation
permutationNumber,	Number of random permutation,have to be less or the same then the total permutation

Value

Csv file with correct cluster name

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
 permutationMovie("docker","/home/lucastormreig/CASC5.0/5_permutationMovie/scratch/",file,7,",",200,5)#

## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.