circrnaOverlapResults: Running circRNA prediction overlap

View source: R/circrnaOverlapResults.R

circrnaOverlapResultsR Documentation

Running circRNA prediction overlap

Description

This function executes the docker container docker4circ to overlap circRNA predictions obtained from multiple tools

Usage

circrnaOverlapResults(
  group = c("sudo", "docker"),
  scratch.folder,
  input.folder,
  output.folder,
  min_support
)

Arguments

group

a character string. Two options: "sudo" or "docker", depending to which group the user belongs

scratch.folder

a character string indicating the scratch folder where docker container will be mounted

input.folder

string indicating the path of the folder containing the samples to overlap

output.folder

string indicating the path of the output folder

min_support

an integer representing the minimum number of algorithms detecting the circRNA.

Value

The list of circRNAs detected in at least the user-defined number of algorithms

Author(s)

Nicola Licheri


kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.