circrnaOverlapResults: Running circRNA prediction overlap

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Running circRNA prediction overlap

Description

This function executes the docker container docker4circ to overlap circRNA predictions obtained from multiple tools

Usage

circrnaOverlapResults(
  group = c("sudo", "docker"),
  scratch.folder,
  input.folder,
  output.folder,
  min_support
)

Arguments

group	a character string. Two options: "sudo" or "docker", depending to which group the user belongs
scratch.folder	a character string indicating the scratch folder where docker container will be mounted
input.folder	string indicating the path of the folder containing the samples to overlap
output.folder	string indicating the path of the output folder
min_support	an integer representing the minimum number of algorithms detecting the circRNA.

Value

The list of circRNAs detected in at least the user-defined number of algorithms

Author(s)

Nicola Licheri

kendomaniac/docker4seq documentation built on April 29, 2024, 9:16 a.m.