pubmedNet: Creating networks on the basis of the links between genes ids...

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Creating networks on the basis of the links between genes ids and pubmedid

Description

This function build networks using the genes.edges generated by getInfo function and create a graph using the genes present in a file generated by DESeq or ANOVAlike

Usage

pubmedNet(group = c("sudo", "docker"), file)

Arguments

group	a character string. Two options: "sudo" or "docker", depending to which group the user belongs
file	a character string indicating the output of DESeq or ANOVAlike to be used. In the same folder must be present also genes.edges file.

Value

one graph plot

Author(s)

Raffaele Calogero

Examples

## Not run: 
    pubmedNet(group="docker", file=paste(getwd(),"DE_anova_rankedBySD_filteredByPositivePatient.txt", sep="/"))


## End(Not run)

kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.