getInfo: Downloading the full set of genes information from HGNC

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Downloading the full set of genes information from HGNC

Description

This function retrieves the full table of curated genes annotations

Usage

getInfo(
  group = c("sudo", "docker"),
  data.folder = getwd(),
  url,
  type = c("pubmed", "omim")
)

Arguments

group	a character string. Two options: "sudo" or "docker", depending to which group the user belongs
data.folder	a character string indicating where downloaded data will be stored
url	the url to download the full dataset
type	PUBMED or OMIM

Value

one file files: gene_with_protein_product.txt

Author(s)

Raffaele Calogero

Examples

## Not run: 
    getInfo(group="docker",data.folder=getwd(),
    url="ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/locus_types/gene_with_protein_product.txt", type="pubmed")


## End(Not run)

kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.