multiQC: A function to handle a docker containier executing MultiQC

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

A function to handle a docker containier executing MultiQC

Description

This function executes MultiQC docker (Ewels et al., 2016. Bioinformatics. 32(19):3047-8) returning the multiqc_report.html file and the content of multiqc_data/ folder

Usage

multiQC(group = c("sudo", "docker"), data.folder)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
data.folder	a character string indicating the folder where input data are located and where output will be written

Author(s)

Giulio Ferrero, giulio.ferrero [at] unito [dot] it, University of Torino

Examples

## Not run: 
    #running skeleton
    multiQC(group="docker", data.folder=getwd())

## End(Not run)

kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.