downloadContainers: Download for the first time all containers embedded in the...

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Download for the first time all containers embedded in the workflows

Description

This is a functin that preapre the docker environment to be used for the first time the docker4seq is installed.

Usage

downloadContainers(group = "docker", containers.file = "all")

Arguments

group	a character string. Two options: "sudo" or "docker", depending to which group the user belongs
containers.file	a character string with the name of the file which indicate which are the initial set of containers to be downloaded. Initally the set is given by a file located in the folder containers of docker4seq package: "all", "rnaseq", "ncrnaseq", "chipseq"

Author(s)

Raffaele Calogero

Examples

## Not run: 
    #running runDocker
     downloadContainers(group="docker", containers.file)


## End(Not run)

kendomaniac/docker4seq documentation built on April 8, 2024, 5:39 p.m.