plot_feature_heatmap: Plot heatmap of features across cells with annotations

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Plot heatmap of features across cells with annotations

Usage

plot_feature_heatmap(
  sce_list,
  features,
  cell_annotations,
  feature_annotations,
  split_cells,
  split_features,
  assay = "logcounts",
  alt_exp = NULL,
  subsample_cells = FALSE,
  show_cell_dend = FALSE,
  show_feature_dend = TRUE,
  ...
)

Arguments

sce_list	list of SingleCellExperiment objects
features	features to use
cell_annotations	columns in colData to annotate on heatmap
feature_annotations	data frame of annotations related to each feature in 'features'
split_cells	columns in colData to split columns (cells) by
split_features	data frame of groups to split rows (features) by
assay	assay in SingleCellExperiment to pull data from
alt_exp	altExp in SingleCellExperiment to pull data from
subsample_cells	whether to subsample cells to smallest group (if split_cells specified)
show_cell_dend	whether to show dendrogram for cells
show_feature_dend	whether to show dendrogram for features
...	params passed to 'ggexp::plot_heatmap'

Examples

NULL

keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.