plot_gex_univariate_qc: Scatterplot of two features of interest from colData with...

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Scatterplot of two features of interest from colData with annotated thresholds and counts based on filters

Usage

plot_gex_univariate_qc(
  sce_list,
  x_filters = NULL,
  x,
  y = NULL,
  color = NULL,
  shape = NULL,
  x_log = TRUE,
  alpha = 1,
  text_size = 3,
  point_size = 0.5,
  facet_rows = NULL,
  facet_columns = NULL,
  facet_type = "wrap",
  ...
)

Arguments

sce_list	List of SingleCellExperiment object
x_filters	List of filters for each SCE object in sce_list from scater::isOutlier, or a vector with attribute named thresholds that is a vector with min and max allowed values
x	Numeric column from colData that is in all objects in sce_list
y	Discrete column from colData that is in all objects in sce_list to split histograms by
color	Column from colData that is in all objects in sce_list
shape	Column from colData that is in all objects in sce_list
x_log	Boolean to use log x-axis
text_size	Font size for annotations
facet_rows	Columns to facet on
facet_columns	Columns to facet on
facet_type	Either "wrap" or "grid", same as ggplot
...	params passed into either facet_wrap or facet_grid, depending on facet_type parameter

Examples

NULL

keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.