read_10x: Read 10X gene expression and VDJ data into a...

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

VDJ data is stored in colData(sce)$vdj for now. This makes it easy to manipulate using the tidyverse for assignment of clonotypes, etc.

Usage

read_10x(
  gene_expr_path = getwd(),
  vdj_path = NA,
  top_n_barcodes = NULL,
  nonzero_barcodes = FALSE
)

Arguments

gene_expr_path	path to gene expression data - this path must contain mtx, features, and barcodes file
vdj_path	path to vdj data - this path must contain all_contig_annotations.csv

Examples

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keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.