Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
|Author||Peter Kharchenko [aut], Viktor Petukhov [aut], Ramus Rydbirk [aut], Evan Biederstedt [aut, cre]|
|Maintainer||Evan Biederstedt <email@example.com>|
|Package repository||View on GitHub|
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