propagateLabels: Estimate labeling distribution for each vertex, based on...

In kharchenkolab/sccore: Core Utilities for Single-Cell RNA-Seq

Estimate labeling distribution for each vertex, based on provided labels.

Description

Estimate labeling distribution for each vertex, based on provided labels.

Usage

propagateLabels(graph, labels, method = "diffusion", ...)

Arguments

graph	igraph graph object
labels	vector of factor or character labels, named by cell names, used in propagateLabelsSolver() and propagateLabelsDiffusion()
method	string Type of propagation. Either 'diffusion' or 'solver'. (default='diffusion') 'solver' gives better result but has bad asymptotics, so it is inappropriate for datasets > 20k cells.
...	additional arguments passed to either propagateLabelsSolver() or propagateLabelsDiffusion()

Value

matrix with distribution of label probabilities for each vertex by rows.

Examples

propagateLabels(conosGraph, labels=cellAnnotations)

kharchenkolab/sccore documentation built on Feb. 26, 2024, 12:41 a.m.