collapseCellsByType: Collapse count matrices by cell type, given min/max number of...
In kharchenkolab/sccore: Core Utilities for Single-Cell RNA-Seq
View source: R/diff_expression.R
collapseCellsByType R Documentation
Collapse count matrices by cell type, given min/max number of cells
Description
Collapse count matrices by cell type, given min/max number of cells
Usage
collapseCellsByType(cm, groups, min.cell.count = 10, max.cell.count = Inf)
Arguments
cm
count matrix
groups
factor specifying cell types
min.cell.count
numeric Minimum number of cells to include (default=10)
max.cell.count
numeric Maximum number of cells to include (default=Inf). If Inf, there is no maximum.
Value
Subsetted factor of collapsed cells by type, with NA cells omitted
kharchenkolab/sccore documentation built on Feb. 26, 2024, 12:41 a.m.
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View source: R/diff_expression.R
| collapseCellsByType | R Documentation |
Collapse count matrices by cell type, given min/max number of cells
Description
Collapse count matrices by cell type, given min/max number of cells
Usage
collapseCellsByType(cm, groups, min.cell.count = 10, max.cell.count = Inf)
Arguments
cm |
count matrix |
groups |
factor specifying cell types |
min.cell.count |
numeric Minimum number of cells to include (default=10) |
max.cell.count |
numeric Maximum number of cells to include (default=Inf). If Inf, there is no maximum. |
Value
Subsetted factor of collapsed cells by type, with NA cells omitted
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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