Files in kharchenkolab/sccore
Core Utilities for Single-Cell RNA-Seq
.Rbuildignore
.circleci/config.yml
.gitignore
.travis.yml
CHANGELOG.md
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/data.R
R/diff_expression.R
R/graph_embedding.R
R/graphs.R
R/helpers.R
R/plots.R
R/saveDeAsJson.R
README.md
data-raw/create_rdata_files.R
data/cellAnnotations.rda
data/conosClusterList.rda
data/conosGraph.rda
data/umapEmbedding.rda
inst/extdata/deview.2.html
inst/extdata/deview.2.js
inst/include/sccore_par.hpp
man/adjacentVertices.Rd
man/adjacent_vertex_weights.Rd
man/appendSpecificityMetricsToDE.Rd
man/as_factor.Rd
man/cellAnnotations.Rd
man/checkPackageInstalled.Rd
man/colSumByFactor.Rd
man/collapseCellsByType.Rd
man/collapseGraphPaga.Rd
man/collapseGraphSum.Rd
man/computeChebyshevCoeffs.Rd
man/conosClusterList.Rd
man/conosGraph.Rd
man/dotPlot.Rd
man/embedGraphUmap.Rd
man/embedKnnGraph.Rd
man/embeddingColorsPlot.Rd
man/embeddingGroupPlot.Rd
man/embeddingPlot.Rd
man/extendMatrix.Rd
man/fac2col.Rd
man/fac2palette.Rd
man/getClusterGraph.Rd
man/get_nearest_neighbors.Rd
man/graphToAdjList.Rd
man/heatFilter.Rd
man/jsDist.Rd
man/mergeCountMatrices.Rd
man/multi2dend.Rd
man/plapply.Rd
man/propagateLabels.Rd
man/propagateLabelsDiffusion.Rd
man/propagateLabelsSolver.Rd
man/propagate_labels.Rd
man/saveDeAsJson.Rd
man/setMinMax.Rd
man/smoothChebyshev.Rd
man/smoothSignalOnGraph.Rd
man/smooth_count_matrix.Rd
man/sn.Rd
man/splitVectorByNodes.Rd
man/styleEmbeddingPlot.Rd
man/umapEmbedding.Rd
man/val2col.Rd
man/val2ggcol.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/graph_embedding.cpp
src/matrix_utils.cpp
src/propagate_labels.cpp
tests/testthat.R
tests/testthat/test_helpers.R
