API for kharchenkolab/sccore
Core Utilities for Single-Cell RNA-Seq
| Global functions | |
|---|---|
| adjacentVertices | Man page Source code |
| adjacent_vertex_weights | Man page Source code |
| appendSpecificityMetricsToDE | Man page Source code |
| as_factor | Man page Source code |
| cellAnnotations | Man page |
| checkPackageInstalled | Man page |
| colSumByFactor | Man page Source code |
| collapseCellsByType | Man page Source code |
| collapseGraphPaga | Man page Source code |
| collapseGraphSum | Man page |
| computeChebyshevCoeffs | Man page |
| conosClusterList | Man page |
| conosGraph | Man page |
| dotPlot | Man page |
| embedGraphUmap | Man page Source code |
| embedKnnGraph | Man page Source code |
| embeddingColorsPlot | Man page Source code |
| embeddingGroupPlot | Man page Source code |
| embeddingPlot | Man page Source code |
| extendMatrix | Man page Source code |
| fac2col | Man page Source code |
| fac2palette | Man page Source code |
| getClusterGraph | Man page |
| get_nearest_neighbors | Man page Source code |
| graphToAdjList | Man page Source code |
| heatFilter | Man page |
| jsDist | Man page Source code |
| mergeCountMatrices | Man page Source code |
| multi2dend | Man page Source code |
| plapply | Man page Source code |
| propagateLabels | Man page |
| propagateLabelsDiffusion | Man page |
| propagateLabelsSolver | Man page |
| propagate_labels | Man page Source code |
| saveDeAsJson | Man page Source code |
| setMinMax | Man page Source code |
| smoothChebyshev | Man page |
| smoothSignalOnGraph | Man page |
| smooth_count_matrix | Man page Source code |
| sn | Man page Source code |
| splitVectorByNodes | Man page Source code |
| styleEmbeddingPlot | Man page Source code |
| umapEmbedding | Man page |
| val2col | Man page Source code |
| val2ggcol | Man page Source code |
