collapseGraphSum: Collapse Graph By Sum
In kharchenkolab/sccore: Core Utilities for Single-Cell RNA-Seq
collapseGraphSum R Documentation
Collapse Graph By Sum
Description
Collapse Graph By Sum
Usage
collapseGraphSum(graph, groups, normalize = TRUE)
Arguments
graph
igraph graph object Graph to be collapsed
groups
factor on vertices describing cluster assignment (can specify integer vertex ids, or character vertex names which will be matched)
normalize
boolean Whether to recalculate edge weight as observed/expected (default=TRUE)
Value
collapsed graph
Examples
collapsed = collapseGraphPaga(conosGraph, igraph::V(conosGraph), linearize=TRUE, winsorize=FALSE)
kharchenkolab/sccore documentation built on Feb. 26, 2024, 12:41 a.m.
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| collapseGraphSum | R Documentation |
Collapse Graph By Sum
Description
Collapse Graph By Sum
Usage
collapseGraphSum(graph, groups, normalize = TRUE)
Arguments
graph |
igraph graph object Graph to be collapsed |
groups |
factor on vertices describing cluster assignment (can specify integer vertex ids, or character vertex names which will be matched) |
normalize |
boolean Whether to recalculate edge weight as observed/expected (default=TRUE) |
Value
collapsed graph
Examples
collapsed = collapseGraphPaga(conosGraph, igraph::V(conosGraph), linearize=TRUE, winsorize=FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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