chiapet: Example Genomic Interaction Data Set

In kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

Example Genomic Interaction Data Set

Description

This object contains genomic interactions on chromosomes 1 to 5, which could be the results of Hi-C or ChIA-PET experiments, done in duplicates.

Usage

chiapet

Format

A list with two components, the data frames rep1_df and rep2_df, which have the following seven columns:

column 1:	chr_a	character; genomic location of anchor A - chromosome (e.g., "chr3")
column 2:	start_a	integer; genomic location of anchor A - start coordinate
column 3:	end_a	integer; genomic location of anchor A - end coordinate
column 4:	chr_b	character; genomic location of anchor B - chromosome (e.g., "chr3")
column 5:	start_b	integer; genomic location of anchor B - start coordinate
column 6:	end_b	integer; genomic location of anchor B - end coordinate
column 7:	fdr	numeric; False Discovery Rate - significance of interaction

kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.