remove_nonstandard_chromosomes1d: Removes Peaks on Non-standard Chromosomes

In kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

Removes Peaks on Non-standard Chromosomes

Description

Removes Peaks on Non-standard Chromosomes

Usage

remove_nonstandard_chromosomes1d(x)

Arguments

x

data frame of genomic peaks, with the following columns (position of columns matter, column names are irrelevant): column 1: chr character; genomic location of peak - chromosome (e.g., "chr3") column 2: start integer; genomic location of peak - start coordinate column 3: end integer; genomic location of peak - end coordinate column 4: value numeric; p-value, FDR, or heuristic used to rank the peaks

Value

x without non-standard chromosomes.

Examples

rep1_df <- remove_nonstandard_chromosomes1d(idr2d:::chipseq$rep1_df)

kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.