remove_nonstandard_chromosomes2d: Removes Interactions on Non-standard Chromosomes

View source: R/auxiliary.R

remove_nonstandard_chromosomes2dR Documentation

Removes Interactions on Non-standard Chromosomes

Description

Removes Interactions on Non-standard Chromosomes

Usage

remove_nonstandard_chromosomes2d(x)

Arguments

x

data frame of genomic interactions, with the following columns (position of columns matter, column names are irrelevant):

column 1: chr_a character; genomic location of anchor A - chromosome (e.g., "chr3")
column 2: start_a integer; genomic location of anchor A - start coordinate
column 3: end_a integer; genomic location of anchor A - end coordinate
column 4: chr_b character; genomic location of anchor B - chromosome (e.g., "chr3")
column 5: start_b integer; genomic location of anchor B - start coordinate
column 6: end_b integer; genomic location of anchor B - end coordinate
column 7: value numeric; p-value, FDR, or heuristic used to rank the interactions

Value

x without non-standard chromosomes.

Examples

rep1_df <- remove_nonstandard_chromosomes2d(idr2d:::chiapet$rep1_df)


kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.