hic: Example Hi-C data set

In kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

Example Hi-C data set

Description

This object contains data from a Hi-C contact map of human chromosome 1 and a resolution of 2.5 * 10^6, extracted from GEO series GSE71831.

Usage

hic

Format

A list with two components, the data frames rep1_df and rep2_df, which have the following four columns:

column 1:	chr	character; genomic location of block - chromosome (e.g., "chr3")
column 2:	region1	integer; genomic location of block - coordinate A
column 3:	region2	integer; genomic location of block - coordinate B
column 4:	value	numeric; heuristic used to rank blocks, in this case: number of reads

kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.