draw_idr_distribution_histogram: Create histogram of IDR values

In kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

Create histogram of IDR values

Description

Creates diagnostic plots to visualize the results of estimate_idr.

Usage

draw_idr_distribution_histogram(
  df,
  remove_na = TRUE,
  xlab = "IDR",
  ylab = "density",
  title = "IDR value distribution"
)

Arguments

df	part of output of estimate_idr, a data frame with at least the following named columns: idr IDR of the peak and the corresponding peak in the other replicate.
remove_na	logical; should NA values be removed?
xlab	character; x axis label
ylab	character; y axis label
title	character; plot title

Value

ggplot2 object; IDR distribution histogram

Examples

idr_results <- estimate_idr1d(idr2d:::chipseq$rep1_df,
                              idr2d:::chipseq$rep2_df,
                              value_transformation = "log")
draw_idr_distribution_histogram(idr_results$rep1_df)

kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.