kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

Getting started

Package details

Bioconductor views Classification DNA3DStructure Epigenetics FunctionalGenomics GeneRegulation HiC PeakDetection
LicenseMIT + file LICENSE
URL https://idr2d.mit.edu
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kkrismer/idr2d documentation built on Jan. 20, 2022, 11:39 a.m.