kkrismer/idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

Getting started

Package details

Bioconductor views Classification DNA3DStructure Epigenetics FunctionalGenomics GeneRegulation HiC PeakDetection
Maintainer
LicenseMIT + file LICENSE
Version1.5.0
URL https://idr2d.mit.edu
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kkrismer/idr2d")
kkrismer/idr2d documentation built on May 28, 2021, 4:46 p.m.