API for kroganlab/artMS
Analytical R tools for Mass Spectrometry
| Global functions | |
|---|---|
| .artmsExtractUniprotId | Source code |
| .artmsMergeSilacEvidenceKeys | Source code |
| .artms_EnrichmentPlotHeatmaps | Source code |
| .artms_RemoveProtBelowThres | Source code |
| .artms_castMaxQToWidePTM | Source code |
| .artms_checkIfFile | Source code |
| .artms_checkMSMSColumnName | Source code |
| .artms_checkRawFileColumnName | Source code |
| .artms_cleanGPROFILER | Source code |
| .artms_enrichForComplexes | Source code |
| .artms_filterData | Source code |
| .artms_foldComplexEnrichment | Source code |
| .artms_getMSstatsFormat | Source code |
| .artms_getPCAplots | Source code |
| .artms_imputeMissingValues | Source code |
| .artms_loadModelqcBasic | Source code |
| .artms_panelCor | Source code |
| .artms_panelHist | Source code |
| .artms_plotAbundanceBoxplots | Source code |
| .artms_plotCorrelationConditions | Source code |
| .artms_plotCorumEnrichment | Source code |
| .artms_plotHeat | Source code |
| .artms_plotNumberProteinsAbundance | Source code |
| .artms_plotNumberProteinsImputedLog2fc | Source code |
| .artms_plotRatioLog2fc | Source code |
| .artms_plotReproducibilityAbundance | Source code |
| .artms_plotReproducibilityEvidence | Source code |
| .artms_prettyPrintHeatmapLabels | Source code |
| .artms_provide_msstats_config_miss_parameters | Source code |
| .artms_qcut | Source code |
| .artms_read_evidence_file | Source code |
| .artms_removeMaxQProteinGroups | Source code |
| .artms_runMSstats | Source code |
| .artms_sampleOverlap | Source code |
| .artms_samplePeptideBarplot | Source code |
| .artms_selectEntryFromFullUniprot | Source code |
| .artms_selectTheOneLog2fc | Source code |
| .artms_significantHits | Source code |
| .artms_summarySE | Source code |
| .artms_unifyColumnNames | Source code |
| .artms_writeContrast | Source code |
| .artms_writeExtras | Source code |
| .convertLong2ShortPTMFormat | Source code |
| .parseFlexibleModFormat | Source code |
| artmsAnalysisQuantifications | Man page Source code |
| artmsAnnotateSpecie | Man page Source code |
| artmsAnnotationUniprot | Man page Source code |
| artmsAvgIntensityRT | Man page Source code |
| artmsChangeColumnName | Man page Source code |
| artmsConvertMetabolomics | Man page Source code |
| artmsDataPlots | Man page Source code |
| artmsEnrichLog2fc | Man page Source code |
| artmsEnrichProfiler | Man page Source code |
| artmsEvidenceToSAINTq | Man page Source code |
| artmsEvidenceToSaintExpress | Man page Source code |
| artmsFilterEvidenceContaminants | Man page Source code |
| artmsGeneratePhSiteExtended | Man page Source code |
| artmsIsEvidenceNewVersion | Man page Source code |
| artmsIsSpeciesSupported | Man page Source code |
| artmsLeaveOnlyUniprotEntryID | Man page Source code |
| artmsMapUniprot2Entrez | Man page Source code |
| artmsMergeEvidenceAndKeys | Man page Source code |
| artmsMsstatsSummary | Man page Source code |
| artmsPhosfateOutput | Man page Source code |
| artmsPhotonOutput | Man page Source code |
| artmsPlotHeatmapQuant | Man page Source code |
| artmsProtein2SiteConversion | Man page |
| artmsQualityControlEvidenceBasic | Man page Source code |
| artmsQualityControlEvidenceExtended | Man page Source code |
| artmsQualityControlMetabolomics | Man page Source code |
| artmsQualityControlSummaryExtended | Man page Source code |
| artmsQuantification | Man page Source code |
| artmsResultsWide | Man page Source code |
| artmsSILACtoLong | Man page Source code |
| artmsSpectralCounts | Man page Source code |
| artmsVolcanoPlot | Man page Source code |
| artmsWriteConfigYamlFile | Man page Source code |
| artms_config | Man page |
| artms_data_corum_mito_database | Man page |
| artms_data_pathogen_LPN | Man page |
| artms_data_pathogen_TB | Man page |
| artms_data_ph_config | Man page |
| artms_data_ph_contrast | Man page |
| artms_data_ph_evidence | Man page |
| artms_data_ph_keys | Man page |
| artms_data_ph_msstats_modelqc | Man page |
| artms_data_ph_msstats_results | Man page |
| artms_data_randomDF | Man page |
