kueckelj/confuns
Convenience Functions

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API for kueckelj/confuns
Convenience Functions

Global functions
Analysis Man page
Analysis-class Man page
AnalysisAspect Man page
AnalysisAspect-class Man page
Classification Man page
Classification-class Man page
Clustering Man page
Clustering-class Man page
ClusteringMethod Man page
ClusteringMethod-class Man page
Correlation Man page
Correlation-class Man page
DimRed Man page
DimRed-class Man page
DimRedMethod Man page
DimRedMethod-class Man page
DimRedPCA Man page
DimRedPCA-class Man page
DimRedTSNE Man page
DimRedTSNE-class Man page
DimRedUMAP Man page
DimRedUMAP-class Man page
OutlierDetection Man page
OutlierDetection-class Man page
OutlierDetectionIQR Man page
OutlierDetectionIQR-class Man page
OutlierDetectionMahalanobis Man page
OutlierDetectionMahalanobis-class Man page
OutlierDetectionMethod Man page
OutlierDetectionMethod-class Man page
abrupt_ascending Man page Source code
abrupt_descending Man page Source code
across_an1 Man page Source code
across_an2 Man page Source code
across_options Man page Source code
across_or Source code
across_picker_input Man page Source code
across_subset_options Source code
across_subset_picker_input Man page Source code
across_vis1 Man page Source code
across_vis2 Man page Source code
adapt_reference Man page Source code
addClusterVarsHclust Man page
addClusterVarsHclust,Analysis-method Man page
addClusterVarsKmeans Man page
addClusterVarsKmeans,Analysis-method Man page
addClusterVarsPam Man page
addClusterVarsPam,Analysis-method Man page
addGroupingVars Man page
addGroupingVars,Analysis-method Man page
addMetaVars Source code
adjust_corr_mtr Man page Source code
adjust_ggplot_params Man page Source code
adjust_sub_colors Man page Source code
agglomerateHierarchicalTrees Man page
agglomerateHierarchicalTrees,Analysis-method Man page
agglomerateHierarchicalTrees,Clustering-method Man page
agglomerate_hierarchical_trees Source code
all_color_palettes Man page Source code
all_color_palettes_vec Man page Source code
all_color_spectra Man page Source code
all_color_spectra_vec Man page Source code
all_colorpanels Man page Source code
all_colorspectra Man page Source code
all_vars_discrete Man page Source code
all_vars_numeric Source code
are_values Man page Source code
are_vectors Man page Source code
argument_dummy Man page Source code
arrange_axis Source code
arrange_rows Man page Source code
assemble_gene_info Source code
assemble_gene_search_dir Source code
assemble_list Man page Source code
assignDefault Man page Source code
assign_corr_default Source code
assign_hclust_default Source code
assign_kmeans_default Source code
assign_obj Man page Source code
assign_pam_default Man page
bar_position_picker_input Man page Source code
bin_numeric_variable Man page Source code
call_flexibly Man page Source code
change_order_input Man page Source code
check_across_subset Man page Source code
check_across_subset2 Man page Source code
check_across_subset_negate Man page Source code
check_assign Man page Source code
check_corr_availability Source code
check_data_frame Man page Source code
check_df_variables Man page Source code
check_directories Man page Source code
check_h_k Man page Source code Source code
check_hclust_availability Source code
check_hclust_methods Source code
check_kmeans_availability Source code
check_ks Man page Source code
check_method_corr Man page Source code
check_no_overlap Man page Source code
check_none_of Man page Source code
check_one_of Man page Source code
check_pam_availability Source code
check_pam_input Source code
check_vector Man page Source code
checkpoint Man page Source code
circumference Man page Source code
clrp_aaas Man page
clrp_egr Man page
clrp_jama Man page
clrp_jco Man page
clrp_lo Man page
clrp_milo Man page
clrp_nejm Man page
clrp_npg Man page
clrp_sifre Man page
clrp_uc Man page
cluster_vec_to_df Source code
color_palettes_md Man page
color_picker_input Man page Source code
color_vector Man page Source code
colorpalettes Man page
colorpanel_picker_input Man page Source code
colorpanels Man page
computeClusteringHclust Man page
computeClusteringHclust,Analysis-method Man page
computeClusteringHclust,Clustering-method Man page
computeClusteringKmeans Man page
computeClusteringKmeans,Analysis-method Man page
computeClusteringKmeans,Clustering-method Man page
computeClusteringPam Man page
computeClusteringPam,Analysis-method Man page
computeClusteringPam,Clustering-method Man page
computeCorrelation Man page
computeCorrelation,Analysis-method Man page
computeCorrelation,Correlation-method Man page
computeDistanceMatrices Man page
computeDistanceMatrices,Analysis-method Man page
computeDistanceMatrices,Clustering-method Man page
computePCA Man page
computePCA,Analysis-method Man page
computePCA,DimRed-method Man page
computeTSNE Man page
computeTSNE,Analysis-method Man page
computeTSNE,DimRed-method Man page
computeUMAP Man page
computeUMAP,Analysis-method Man page
computeUMAP,DimRed-method Man page
compute_clustering_kmeans Man page Source code
compute_clustering_pam Man page Source code
compute_dim_red Source code
compute_dist_matrices Source code
compute_distance_matrices Source code
compute_hierarchical_cluster Source code
corr_dummy Man page Source code
corr_mtr_to_df Man page Source code
correlate_across Source code
correlate_all Source code
create_progress_bar Man page Source code
crop_gene_info Source code
define_label_params Source code
degr2rad Man page Source code
detectOutliers Man page
detectOutliers,Analysis-method Man page
detectOutliers,OutlierDetection-method Man page
detectOutliersIQR Man page Source code
detectOutliersMahalanobis Man page Source code
detect_outliers_iqr Man page Source code
detect_outliers_mahalanobis Man page Source code
df Man page Source code
discard_if Man page Source code
discard_numeric_vars Source code
discard_unnamed Man page Source code
distinct_corr_df Source code
diverging Man page
early_peak Man page Source code
error_handler Man page Source code
extract_feedback Man page Source code
extract_full_gene_name Source code
extract_gene_id Source code
extract_gene_symbol Source code
extract_gene_type Source code
extract_organism Source code
extract_summary Source code
extract_synonyms Source code
feedback_list Man page
filter_genes Man page Source code
fit_curve Man page Source code
gene_info_df Man page
getAnalysisAspect Man page
getAnalysisAspect,Analysis-method Man page
getAvgSilWidthsDf Man page
getAvgSilWidthsDf,Analysis-method Man page
getAvgSilWidthsDf,Clustering-method Man page
getAvgSilWidthsDf,ClusteringPam-method Man page
getClusterVarsHclust Man page
getClusterVarsHclust,Analysis-method Man page
getClusterVarsHclust,Clustering-method Man page
getClusterVarsKmeans Man page
getClusterVarsKmeans,Analysis-method Man page
getClusterVarsKmeans,Clustering-method Man page
getClusterVarsPam Man page
getClusterVarsPam,Analysis-method Man page
getClusterVarsPam,Clustering-method Man page
getClustering Man page
getClusteringHclust Man page
getClusteringHclust,Clustering-method Man page
getClusteringKmeans Man page
getClusteringKmeans,Clustering-method Man page
getClusteringPam Man page
getClusteringPam,Clustering-method Man page
getCorrDf Man page
getCorrDf,Analysis-method Man page
getCorrDf,Correlation-method Man page
getCorrMtr Man page
getCorrMtr,Analysis-method Man page
getCorrMtr,Correlation-method Man page
getCorrelation Man page
getDendro Man page
getDendro,Analysis-method Man page
getDendro,Clustering-method Man page
getDendroSegmentDf Man page
getDendroSegmentDf,Analysis-method Man page
getDendroSegmentDf,Clustering-method Man page
getDf Man page
getDf,Analysis-method Man page
getDf,AnalysisAspect-method Man page
getDimRed Man page
getDistMtr Man page
getDistMtr,Analysis-method Man page
getDistMtr,Clustering-method Man page
getDistMtr,ClusteringHclust-method Man page
getEmbeddingDf Man page
getEmbeddingDf,Analysis-method Man page
getEmbeddingDf,DimRed-method Man page
getHclust Man page
getHclust,Analysis-method Man page
getHclust,Clustering-method Man page
getHclust,ClusteringHclust-method Man page
getKeyDf Man page
getKeyDf,Analysis-method Man page
getKeyDf,AnalysisAspect-method Man page
getKmeans Man page
getKmeans,Analysis-method Man page
getKmeans,Clustering-method Man page
getKmeans,ClusteringKmeans-method Man page
getMedoidsDf Man page
getMedoidsDf,Analysis-method Man page
getMedoidsDf,Clustering-method Man page
getMedoidsDf,ClusteringPam-method Man page
getMetaNames Man page
getMetaNames,Analysis-method Man page
getMtr Man page
getMtr,Analysis-method Man page
getMtr,AnalysisAspect-method Man page
getOutlierIDs Man page
getOutlierIDs,Analysis-method Man page
getOutlierIDs,OutlierDetection-method Man page
getOutlierIDs,OutlierDetectionIQR-method Man page
getOutlierResults Man page
getOutlierResults,Analysis-method Man page
getOutlierResults,OutlierDetection-method Man page
getPam Man page
getPam,Analysis-method Man page
getPam,Clustering-method Man page
getPam,ClusteringPam-method Man page
getRcorr Man page
getRcorr,Analysis-method Man page
getRcorr,Correlation-method Man page
getRcorr,CorrelationMethod-method Man page
getResults Man page
getResults,AnalysisAspect-method Man page
getResults,OutlierDetection-method Man page
getScaledDf Man page
getScaledDf,Analysis-method Man page
getScaledDf,AnalysisAspect-method Man page
getScaledMtr Man page
getScaledMtr,Analysis-method Man page
getScaledMtr,AnalysisAspect-method Man page
getSilWidthsDf Man page
getSilWidthsDf,Analysis-method Man page
getSilWidthsDf,Clustering-method Man page
getSilWidthsDf,ClusteringPam-method Man page
getVariableNames Man page
getVariableNames,Analysis-method Man page
getVariableNames,AnalysisAspect-method Man page
get_character_names Source code
get_corr_data Source code
get_corr_results Source code
get_dendro_data Source code
get_dim_red_df Source code
get_factor_names Source code
get_full_gene_names Man page Source code
get_gene_names Man page Source code
get_gene_synonyms Man page Source code
get_hclust_data Source code
get_hclust_df Source code
get_hclust_obj Source code
get_html_text Source code
get_kmeans_data Source code
get_kmeans_df Source code
get_kmeans_obj Source code
get_medoids_df Source code
get_numeric_names Source code
ggplot2_dummy Man page Source code
ggpubr_comparison_list Man page Source code
ggpubr_y_labels Man page Source code
ggpubr_y_labels2 Source code
give_feedback Man page Source code
glue_list_report Man page Source code
gradient Man page Source code
hclust_dummy Man page Source code
hello Man page
hlpr_order_input Man page Source code
hm Man page Source code
hs Man page Source code
html_breaks Man page Source code
immediate_ascending Man page Source code
immediate_descending Man page Source code
include_variables_picker_input Man page Source code
info_deprecated Source code
initiateAnalysis Man page Source code
initiateAnalysisAspect Man page Source code
initiateClustering Man page Source code
initiateCorrelation Man page Source code
initiateDimRed Man page Source code
initiateOutlierDetection Man page Source code
initiate_corr_object Source code
initiate_hclust_object Source code
initiate_kmeans_object Source code
initiate_pam_object Source code
is_any_of Man page Source code
is_color Man page Source code
is_gene_symbol Source code
is_gene_synonym Source code
is_key_variable Man page Source code
is_list Man page Source code
is_named Man page Source code
is_value Man page Source code
is_vec Man page Source code
join_lists Man page Source code
join_safely Man page Source code
keep_named Man page Source code
late_peak Man page Source code
lazy_check_dummy Man page Source code
legend_bottom Man page
legend_left Man page
legend_none Man page
legend_right Man page
lin_alg_dummy Man page Source code
linear Man page Source code
load_files Man page Source code
load_functions Man page Source code
load_scripts Man page Source code
log Man page Source code
logical_to_group Man page Source code
lrename Source code
lrename_with Source code
lselect Man page Source code
make_available Man page Source code
make_capital_letters Man page Source code
make_facet_add_on Man page Source code
make_gene_card Source code
make_gene_info_list Source code
make_pretty_df Man page Source code
make_pretty_dummy Man page Source code
make_pretty_levels Man page Source code
make_pretty_name Man page Source code
make_pretty_names Man page Source code
make_scattermore_add_on Source code
make_trig_vec Man page Source code
melt_rcorr Man page Source code
moduleCategoricalStatisticsPlotServer Source code
moduleCategoricalStatisticsPlotUI Source code
moduleDescriptiveStatisticsPlotServer Source code
moduleDescriptiveStatisticsPlotUI Source code
mrename Man page Source code
mrename_with Source code
normalize Man page Source code
normalize_dummy Man page Source code
normalize_zscore Man page Source code
one_peak Man page Source code
perform_kmeans_clustering Source code
perform_pam_clustering Source code
plotAvgSilWidths Man page
plotAvgSilWidths,Analysis-method Man page
plotAvgSilWidths,Clustering-method Man page
plotBoxplot Man page
plotBoxplot,Analysis-method Man page
plotCorrplot Man page
plotCorrplot,Analysis-method Man page
plotCorrplot,Correlation-method Man page
plotDendrogram Man page
plotDendrogram,Analysis-method Man page
plotDendrogram,Clustering-method Man page
plotDensityplot Man page
plotDensityplot,Analysis-method Man page
plotHistogram Man page
plotHistogram,Analysis-method Man page
plotPCA Man page
plotPCA,Analysis-method Man page
plotPCA,DimRed-method Man page
plotRidgeplot Man page
plotRidgeplot,Analysis-method Man page
plotScatterplot Man page
plotScatterplot,AnalysisAspect-method Man page
plotScreeplot Man page
plotScreeplot,Analysis-method Man page
plotScreeplot,Clustering-method Man page
plotSilWidths Man page
plotSilWidths,Analysis-method Man page
plotSilWidths,Clustering-method Man page
plotTSNE Man page
plotTSNE,Analysis-method Man page
plotTSNE,DimRed-method Man page
plotUMAP Man page
plotUMAP,Analysis-method Man page
plotUMAP,DimRed-method Man page
plotViolinplot Man page
plotViolinplot,Analysis-method Man page
plot_and_save Man page Source code
plot_barplot Man page Source code
plot_boxplot Man page Source code
plot_categorical_statistics_shiny Man page Source code
plot_correlation_sd Source code
plot_corrplot Source code
plot_corrplots Source code
plot_dendrogram Source code
plot_dendrograms Source code
plot_density Man page Source code
plot_descriptive_statistics_shiny Man page Source code
plot_dim_red Source code
plot_dot_plot_1d Man page Source code
plot_dot_plot_2d Man page Source code
plot_gsea_dot Man page Source code
plot_gsea_dot.data.frame Man page Source code
plot_gsea_dot.hyp Man page Source code
plot_gsea_dot.list Man page
plot_histogram Man page Source code
plot_medoid_barchart Source code
plot_mosaic Man page Source code
plot_ridgeplot Man page Source code
plot_scatterplot Man page Source code
plot_screeplot Source code
plot_statistics Man page Source code
plot_statistics_interactive Man page Source code
plot_vioboxplot Man page Source code
plot_violin Man page Source code
plot_violinplot Man page
prepare_cluster_data Source code
print_gene_info Man page Source code
print_hclust_overview Source code
process_and_shift_df Man page Source code
proj_py_install_pkgs Man page Source code
proj_py_pkg_installed Man page Source code
proj_py_pkgs Man page Source code
proj_py_use_venv Man page Source code
proj_setup Man page Source code
pull_var Man page Source code
pythagoras_theorem Man page Source code
rad2degr Man page Source code
radius Man page Source code
reduce_vec Source code
renameKeyVariable Man page
renameKeyVariable,AnalysisAspect-method Man page
rename_numeric_vars Source code
rename_numeric_vars_with Source code
rename_safely Man page Source code
rescale_df Source code
rgx_lookahead Man page Source code
rgx_lookbehind Source code
scaleData Man page
scaleData,Analysis-method Man page
scaleData,AnalysisAspect-method Man page
scale_color_add_on Man page Source code
scatter_correlation_df Source code
scollapse Man page Source code
select_columns Man page Source code
sequential_multi_hue Man page
sequential_single_hue Man page
setAnalysisAspect Man page
setAnalysisAspect,Analysis-method Man page
setData Man page
setData,Analysis-method Man page
setData,AnalysisAspect-method Man page
setInstruction Man page
setInstruction,Analysis-method Man page
set_corr_default Source code
set_data_hlpr Man page Source code
set_hclust_default Source code
set_kmeans_default Source code
set_pam_default Source code
sharp_peak Man page Source code
shiny_fdb Man page Source code
show_colors Man page Source code
sinus Man page Source code
slider_input_alpha Man page Source code
slider_input_size Man page Source code
statistics_facet_wrap Man page Source code
statistics_geom_jitter Man page Source code
statistics_tests Man page Source code
str_extract_after Man page Source code
str_extract_before Man page Source code
str_suggest_list Man page Source code
str_suggest_vec Man page Source code
subset_mtr Source code
synonyms_to_hgnc Man page Source code
theme_statistics Man page Source code
transform_df Source code
two_peaks Man page Source code
unfactor Man page Source code
unique_safely Man page Source code
validAnalysisAspects Man page Source code
validColorPalettes Man page Source code
validColorSpectra Man page Source code
validCurves Man page Source code
validInput Man page Source code
validLineTypes Man page Source code
validMethodsAggl Man page Source code
validMethodsClustering Man page Source code
validMethodsCorrelation Man page Source code
validMethodsDimRed Man page Source code
validMethodsDist Man page Source code
validMethodsKmeans Man page Source code
validMethodsOutlierDetection Man page Source code
validMethodsPam Man page Source code
validScaleTransformations Source code
validShapesCorrelation Man page Source code
validTypesCorrelation Man page Source code
validVarTransformations Source code
variable_classes Man page Source code
variable_classes2 Man page Source code
verbose Man page Source code
vredefine Source code
vredefine_with Source code
vrename Source code
vrename_with Source code
vselect Man page Source code
wrap_standalone Man page Source code
wrap_strings Man page Source code
kueckelj/confuns documentation built on July 4, 2024, 4:53 p.m.

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