kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects
The package distIUPAC calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects. Further sliding window analyses can be applied to get dXY-stats like deltaMean, RNDmin or ABBA-BABA statistics. Sliding window analysis can either be performed on base-pair windows (e.g. 1,000, 100,000, ...) specifiying a window length and a window jump or based on SNP positions along the analyzed sequence alignment (e.g. bi-allelic or tri-allelic sites).
Getting started
Browse package contents
Package details |
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| Maintainer | Kristian K Ullrich <ullrich@evolbio.mpg.de> |
| License | MIT + file LICENSE |
| Version | 0.1.1 |
| URL | https://github.com/kullrich/distIUPAC |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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