iupacString: iupacString

In kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects

Description

This function returns a IUPAC sequence based on a Biostrings objects

Usage

iupacString(dna, x.pos = 1, y.pos = 2, name = "iupacString",
  wlen = 25000, start.by = 1, end.by = NULL, threads = 1,
  pB = FALSE)

Arguments

dna	DNAStringSet of length 2 [mandatory]
x.pos	population X positions [default: 1]
y.pos	population X positions [default: 2]
wlen	sliding window length [default: 25000]
start.by	optional start position [default: 1]
end.by	optional end position [default: NULL]
threads	number of parallel threads [default: 1]
pB	specifies if progress should be shown as a progress bar [default: TRUE]

Author(s)

Kristian K Ullrich

See Also

triSites, biSites

Examples

data("MySequences", package = "distIUPAC")
iupacString(MySequences, x.pos=5, y.pos=6)

kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.