dnastring2apealg: dnastring2apealg
In kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects
Description
Usage
Arguments
Author(s)
See Also
Examples
View source: R/dnastring2apealg.R
Description
This function transforms a DNAStringSet object from the
Biostrings package into an alignment class of the
ape package.
Usage
1
dnastring2apealg(dnastring)
Arguments
dnastring
DNAStringSet
Author(s)
Kristian K Ullrich
See Also
DNAStringSet, as.alignment
Examples
1
2
3
data("MySequences", package="distIUPAC")
alignment<-dnastring2apealg(MySequences)
alignment.bin<-ape::as.DNAbin(alignment)
kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.
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Description Usage Arguments Author(s) See Also Examples
View source: R/dnastring2apealg.R
Description
This function transforms a DNAStringSet object from the
Biostrings package into an alignment class of the
ape package.
Usage
1 | dnastring2apealg(dnastring)
|
Arguments
dnastring |
|
Author(s)
Kristian K Ullrich
See Also
DNAStringSet, as.alignment
Examples
1 2 3 | data("MySequences", package="distIUPAC")
alignment<-dnastring2apealg(MySequences)
alignment.bin<-ape::as.DNAbin(alignment)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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