rcpp_distIUPACmatrix_ab: rcpp_distIUPACmatrix_ab
In kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
This function calculates pairwise IUPAC distance between
two character objects (a, b)of length nsites using
a specific scoreMatrix and returns the number of used sites.
Usage
1
rcpp_distIUPACmatrix_ab(a, b, scoreMatrix, nsites)
Arguments
a
as.character(DNAString)
b
as.character(DNAString)
scoreMatrix
scoreMatrix
nsites
number of sites
Author(s)
Kristian K Ullrich
See Also
scoreMatrix,
distIUPACmatrix,
rcpp_distIUPACmatrix,
dist.dna
Examples
1
2
3
4
5
6
##load sequence data
data("MySequences", package="distIUPAC")
##load scoring matrix
MyScoreMatrix<-scoreMatrix()
rcpp_distIUPACmatrix_ab(as.character(MySequences[1]), as.character(MySequences[2]),
scoreMatrix=MyScoreMatrix, nsites=nchar(as.character(MySequences[1]))[[1]])
kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
This function calculates pairwise IUPAC distance between
two character objects (a, b)of length nsites using
a specific scoreMatrix and returns the number of used sites.
Usage
1 | rcpp_distIUPACmatrix_ab(a, b, scoreMatrix, nsites)
|
Arguments
a |
|
b |
|
scoreMatrix |
|
nsites |
number of sites |
Author(s)
Kristian K Ullrich
See Also
scoreMatrix,
distIUPACmatrix,
rcpp_distIUPACmatrix,
dist.dna
Examples
1 2 3 4 5 6 | ##load sequence data
data("MySequences", package="distIUPAC")
##load scoring matrix
MyScoreMatrix<-scoreMatrix()
rcpp_distIUPACmatrix_ab(as.character(MySequences[1]), as.character(MySequences[2]),
scoreMatrix=MyScoreMatrix, nsites=nchar(as.character(MySequences[1]))[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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