rcpp_distIUPAC_ab: rcpp_distIUPAC_ab
In kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
This function calculates pairwise IUPAC distance between
two character objects (a, b)of length nsites and
returns the number of used sites.
Usage
1
rcpp_distIUPAC_ab(a, b, nsites)
Arguments
a
as.character(DNAString)
b
as.character(DNAString)
nsites
number of sites
Author(s)
Kristian K Ullrich
See Also
distIUPAC,
rcpp_distIUPAC,
distIUPACmatrix,
rcpp_distIUPACmatrix,
rcpp_distIUPACmatrix_ab,
dist.dna
Examples
1
2
3
data("MySequences", package="distIUPAC")
rcpp_distIUPAC_ab(as.character(MySequences[1]), as.character(MySequences[2]),
nsites=nchar(as.character(MySequences[1]))[[1]])
kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
This function calculates pairwise IUPAC distance between
two character objects (a, b)of length nsites and
returns the number of used sites.
Usage
1 | rcpp_distIUPAC_ab(a, b, nsites)
|
Arguments
a |
|
b |
|
nsites |
number of sites |
Author(s)
Kristian K Ullrich
See Also
distIUPAC,
rcpp_distIUPAC,
distIUPACmatrix,
rcpp_distIUPACmatrix,
rcpp_distIUPACmatrix_ab,
dist.dna
Examples
1 2 3 | data("MySequences", package="distIUPAC")
rcpp_distIUPAC_ab(as.character(MySequences[1]), as.character(MySequences[2]),
nsites=nchar(as.character(MySequences[1]))[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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