Files in kullrich/distIUPAC

calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/MySequences-data.R R/RcppExports.R R/abbababa.xyioStats.R R/bam2consensus.R R/biSites.R R/dist.xStats.R R/dist.xyStats.R R/dist.xyiStats.R R/dist.xyioStats.R R/dist.xyoStats.R R/distIUPACsw.R R/dnabin2dnastring.R R/dnastring2apealg.R R/dnastring2dnabin.R R/doFasta2.R R/doFasta4.R R/faidx2seq.R R/getTrees.R R/globalDeletion.R R/iupac2diploid.R R/iupac2gphocs.R R/iupac2pomo.r R/iupac2treemix.r R/iupacString.R R/posgen.R R/scoreMatrix.R R/subString.R R/swgen.R R/tmpSEQsw.R R/triSites.R R/xStats.R R/xyMultiStats.R R/xyStats.R R/xyiStats.R R/xyioStats.R R/xyoStats.R README.md

data/MySequences.rda

data/seqIUPAC.fasta.gz

distIUPAC.Rproj

docs/LICENSE-text.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

inst/extdata/example.fasta.gz

inst/extdata/example.fasta.gz.fai

inst/extdata/example.fasta.gz.gzi

man/MySequences-data.Rd man/abbababa.xyioStats.Rd man/bam2consensus.Rd man/biSites.Rd man/dist.xStats.Rd man/dist.xyStats.Rd man/dist.xyiStats.Rd man/dist.xyioStats.Rd man/dist.xyoStats.Rd man/distIUPAC.Rd man/distIUPACmatrix.Rd man/distIUPACsw.Rd man/dnabin2dnastring.Rd man/dnastring2apealg.Rd man/dnastring2dnabin.Rd man/doFasta2.Rd man/doFasta4.Rd man/faidx2seq.Rd man/getTrees.Rd man/globalDeletion.Rd man/iupac2diploid.Rd man/iupac2gphocs.Rd man/iupac2pomo.Rd man/iupac2treemix.Rd man/iupacString.Rd man/pairwiseDeletion.Rd man/posgen.Rd man/rcpp_distIUPAC.Rd man/rcpp_distIUPAC_ab.Rd man/rcpp_distIUPACmatrix.Rd man/rcpp_distIUPACmatrix_ab.Rd man/rcpp_pairwiseDeletion.Rd man/scoreMatrix.Rd man/subString.Rd man/swgen.Rd man/tmpSEQsw.Rd man/triSites.Rd man/xStats.Rd man/xyMultiStats.Rd man/xyStats.Rd man/xyiStats.Rd man/xyioStats.Rd man/xyoStats.Rd

src/RcppExports.cpp

src/distIUPAC.cpp

src/distIUPACmatrix.cpp

src/pairwiseDeletion.cpp

src/rcpp_distIUPAC.cpp

src/rcpp_distIUPAC_ab.cpp

src/rcpp_distIUPACmatrix.cpp

src/rcpp_distIUPACmatrix_ab.cpp

src/rcpp_iupacString2diploidString.cpp

src/rcpp_iupacString_ab.cpp

src/rcpp_pairwiseDeletion.cpp

vignettes/Intro.Rmd

vignettes/Intro.html

vignettes/bam2IUPAC.Rmd

vignettes/bam2IUPAC.html

vignettes/bam2IUPAC.md vignettes/distStats.Rmd

vignettes/distStats.html

vignettes/distStats.md

kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.