In kullrich/distIUPAC: calculates IUPAC distances on Biostrings DNAStringSet and BStringSet objects

References

Korneliussen TS, Albrechtsen A and Nielsen R. ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinformatics (2014) 15:356 https://doi.org/10.1186/s12859-014-0356-4

Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 25:1754 https://doi.org/10.1093/bioinformatics/btp324

Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics (2004) 2:289 https://doi.org/10.1093/bioinformatics/btg412

Picard tools http://broadinstitute.github.io/picard

Sedlazeck FJ, Rescheneder P, von Haeseler A. NextGenMap: fast and accurate read mapping in highly polymorphic genomes. Bioinformatics (2013) 21:2790 https://doi.org/10.1093/bioinformatics/btt468

kullrich/distIUPAC documentation built on Jan. 9, 2020, 2:50 p.m.