collapse_labels: collaps overlay data

In lagelab/Genoppi: genoppi

collaps overlay data

Description

a data.frame used to overlay items in genoppi will look for non-unqiue gene names and combine them into a single informative line using their alt_label (e.g. snp) and their corrsponding dataset.

Usage

collapse_labels(
  overlay,
  dataset = "dataset",
  collapse_into = "alt_label",
  collapse_by = "gene",
  dataset_collapse_sep = ": ",
  item_sep = " <br>"
)

Arguments

overlay	a data.frame
dataset	the main dataset name that is to be combined.
collapse_into	the column that will contain the collapsed entries.
collapse_by	what identifying colummn is the data to be collapsed by?
dataset_collapse_sep	how should the dataset column and collapse-column be seperated by when collapsed?
item_sep	how should each collapsed item be seperated from the next? Default is newline.

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.