goa_bp_table: GO biological process annotations

In lagelab/Genoppi: genoppi

GO biological process annotations

Description

A dataset containing annotations for 17,814 genes in 12,362 GO biological process terms.

Usage

goa_bp_table

Format

A data frame with 140,067 rows and 3 variables:

Gene.symbol

HGNC gene symbol

GO.ID

GO term ID

GO.name

GO term name

Source

Homo sapiens EBI Gene Ontology Annotation Database protein dataset (2020-03-23 release) downloaded on 2020-03-30 from: http://current.geneontology.org/products/pages/downloads.html

References

Ashburner M, Ball CA, Blake JA, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25(1):25-29. doi:10.1038/75556

The Gene Ontology Consortium. The Gene Ontology Resource: 20 years and still GOing strong. Nucleic Acids Res. 2019;47(D1):D330-D338. doi:10.1093/nar/gky1055

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, gwas_table, hgnc_group_table, hpa_rna, inweb_table, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.