example_data3: Example proteomic data (3)

In lagelab/Genoppi: genoppi

Example proteomic data (3)

Description

A dataset containing gene symbol and corresponding log2 fold change values for 3 replicates, derived from BCL2 (bait) vs. IgG (control) immunoprecipitation-mass spectrometry experiment in a cancer cell line (G401).

Usage

example_data3

Format

A data frame with 556 rows and 4 variables:

gene

HGNC gene symbol

rep1

replicate 1 log2 fold change

rep2

replicate 2 log2 fold change

rep3

replicate 3 log2 fold change

Source

Genoppi IP-MS experiment

References

Pintacuda G, Lassen FH, Hsu YH, Kim A, Martín JM, Malolepsza E et al. Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data. Nat Commun. 2021;12(1):2580. doi:10.1038/s41467-021-22648-5

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, gwas_table, hgnc_group_table, hpa_rna, inweb_table, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.