get_gwas_lists: Retreive GWAS catalog data for a given list of traits
In lagelab/Genoppi: genoppi
View source: R/get_gwas_lists.R
get_gwas_lists R Documentation
Retreive GWAS catalog data for a given list of traits
Description
Create gene list data.frame from input traits
Usage
get_gwas_lists(traits, genes)
Arguments
traits
vector of GWAS catalog traits. See gwas_table$DISEASE.TRAIT
genes
vector of gene names (genes detected in proteomic data)
Value
data.frame containing GWAS catalog info (PUBMEDID, DISEASE.TRAIT, SNP, P.VALUE, STUDY.ACCESSION) + MAPPED_GENE columns (restricting to traits and genes in input vectors)
lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.
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View source: R/get_gwas_lists.R
| get_gwas_lists | R Documentation |
Retreive GWAS catalog data for a given list of traits
Description
Create gene list data.frame from input traits
Usage
get_gwas_lists(traits, genes)
Arguments
traits |
vector of GWAS catalog traits. See |
genes |
vector of gene names (genes detected in proteomic data) |
Value
data.frame containing GWAS catalog info (PUBMEDID, DISEASE.TRAIT, SNP, P.VALUE, STUDY.ACCESSION) + MAPPED_GENE columns (restricting to traits and genes in input vectors)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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