get_inweb_list: Retrieve InWeb data for a given bait

In lagelab/Genoppi: genoppi

Retrieve InWeb data for a given bait

Description

Use inweb_table data to get InWeb interactors and non-interactors of bait.

Usage

get_inweb_list(bait, type = "all")

Arguments

bait	name of bait protein
type	string ("all","hc","gs") indicating types of interactors to return (all, high-confidence, or gold-standard)

Value

data.frame containing gene and significant columns for all non-bait InWeb genes (significant=T for InWeb interactors of bait). NULL if bait not found in InWeb.

Examples

## Not run: 
df1 <- get_inweb_list('BCL2',type='all')
df2 <- get_inweb_list('BCL2',type='hc')
df3 <- get_inweb_list('BCL2',type='gs')

## End(Not run)

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.