get_bioplex_list: Retrieve Bioplex 3.0 interactors for a given bait

In lagelab/Genoppi: genoppi

Retrieve Bioplex 3.0 interactors for a given bait

Description

Use bioplex_table data to get bioplex interactors and non-interactors of bait. See ?bioplex_table for more details about the data set.

Usage

get_bioplex_list(bait, p = 0.9)

Arguments

bait	string. name of bait protein
p	numeric. Probability of the protein being an interactor with the bait. See ?bioplex_table.

Value

data.frame containing gene and significant columns for all non-bait bioplex genes (significant=T for bioplex 3.0 interactors of bait). NULL if bait not found in bioplex.

Examples

## Not run: 
df1 <- get_bioplex_list('BCL2',p = 0.5)

## End(Not run)

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.